matlab-based modeling software openflux Search Results


openflux  (MathWorks Inc)
90
MathWorks Inc openflux
Openflux, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/openflux/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
openflux - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
matlab-based modeling software openflux2  (MathWorks Inc)
90
MathWorks Inc matlab-based modeling software openflux2
Matlab Based Modeling Software Openflux2, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based modeling software openflux2/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based modeling software openflux2 - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
matlab-based modeling software openflux  (MathWorks Inc)
90
MathWorks Inc matlab-based modeling software openflux
Matlab Based Modeling Software Openflux, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based modeling software openflux/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based modeling software openflux - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
13 c-mfa  (MathWorks Inc)
90
MathWorks Inc 13 c-mfa
13 C Mfa, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/13 c-mfa/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
13 c-mfa - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
fmincon  (MathWorks Inc)
90
MathWorks Inc fmincon
Algorithm for weighted least-square parameter estimation . OpenFLUX uses MATLAB's <t>FMINCON</t> to minimize the residual error ( ) between the experimental MIDs ( ) and the simulated MIDs ( ), by optimizing the free fluxes ( ), which are subjected to lower and upper boundary value constraints. is weighted by the variance matrix ( D ). The inverse compactification function is used to transform reverse flux from a numerical parameter ( v ←, [0,1] ) into a physical flux parameter ( v ← ). The null-space matrix ( Ns ) is then used to calculate the flux vector ( ) from the free fluxes ( ). Finally, is calculated using and known MIDs of the input substrates ( ). FMINCON terminates when a local minimum is found, revealing the optimum free fluxes.
Fmincon, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fmincon/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
fmincon - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
fmincon function  (MathWorks Inc)
90
MathWorks Inc fmincon function
Algorithm for weighted least-square parameter estimation . OpenFLUX uses MATLAB's <t>FMINCON</t> to minimize the residual error ( ) between the experimental MIDs ( ) and the simulated MIDs ( ), by optimizing the free fluxes ( ), which are subjected to lower and upper boundary value constraints. is weighted by the variance matrix ( D ). The inverse compactification function is used to transform reverse flux from a numerical parameter ( v ←, [0,1] ) into a physical flux parameter ( v ← ). The null-space matrix ( Ns ) is then used to calculate the flux vector ( ) from the free fluxes ( ). Finally, is calculated using and known MIDs of the input substrates ( ). FMINCON terminates when a local minimum is found, revealing the optimum free fluxes.
Fmincon Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fmincon function/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
fmincon function - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
matlab 7.2  (MathWorks Inc)
90
MathWorks Inc matlab 7.2
Algorithm for weighted least-square parameter estimation . OpenFLUX uses MATLAB's <t>FMINCON</t> to minimize the residual error ( ) between the experimental MIDs ( ) and the simulated MIDs ( ), by optimizing the free fluxes ( ), which are subjected to lower and upper boundary value constraints. is weighted by the variance matrix ( D ). The inverse compactification function is used to transform reverse flux from a numerical parameter ( v ←, [0,1] ) into a physical flux parameter ( v ← ). The null-space matrix ( Ns ) is then used to calculate the flux vector ( ) from the free fluxes ( ). Finally, is calculated using and known MIDs of the input substrates ( ). FMINCON terminates when a local minimum is found, revealing the optimum free fluxes.
Matlab 7.2, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab 7.2/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab 7.2 - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier

Image Search Results


Algorithm for weighted least-square parameter estimation . OpenFLUX uses MATLAB's FMINCON to minimize the residual error ( ) between the experimental MIDs ( ) and the simulated MIDs ( ), by optimizing the free fluxes ( ), which are subjected to lower and upper boundary value constraints. is weighted by the variance matrix ( D ). The inverse compactification function is used to transform reverse flux from a numerical parameter ( v ←, [0,1] ) into a physical flux parameter ( v ← ). The null-space matrix ( Ns ) is then used to calculate the flux vector ( ) from the free fluxes ( ). Finally, is calculated using and known MIDs of the input substrates ( ). FMINCON terminates when a local minimum is found, revealing the optimum free fluxes.

Journal: Microbial Cell Factories

Article Title: OpenFLUX: efficient modelling software for 13 C-based metabolic flux analysis

doi: 10.1186/1475-2859-8-25

Figure Lengend Snippet: Algorithm for weighted least-square parameter estimation . OpenFLUX uses MATLAB's FMINCON to minimize the residual error ( ) between the experimental MIDs ( ) and the simulated MIDs ( ), by optimizing the free fluxes ( ), which are subjected to lower and upper boundary value constraints. is weighted by the variance matrix ( D ). The inverse compactification function is used to transform reverse flux from a numerical parameter ( v ←, [0,1] ) into a physical flux parameter ( v ← ). The null-space matrix ( Ns ) is then used to calculate the flux vector ( ) from the free fluxes ( ). Finally, is calculated using and known MIDs of the input substrates ( ). FMINCON terminates when a local minimum is found, revealing the optimum free fluxes.

Article Snippet: OpenFLUX uses FMINCON, a gradient-based minimization search function contained in MATLAB's Optimization Toolbox, to perform both flux parameter estimation and sensitivity analysis.

Techniques: Plasmid Preparation